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My goal is to use a master data extension which has all contacts regardless of the possibility of sending emails. So I would like to use Queries to filter this Data Extension and create a new one with only the contacts who has accepted to receive an email. How can I create this DE from the master using queries? Thank you in advance

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I do not think SFMC has the functionality to create a new Data Extension by using a query activity in automation studio. But since you need need to just filter your master data extension, I recommend you create a duplicate of this master data extension, then you can write the query:

select {{specify your required column names}} from master_data_extension where flag_opt_in == "YES"

Then for the target Data extension you can choose your pre-build data extension which append/update/overwrite as per your needs.

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